Technical University of Munich

Vladimir Golkov

PhD StudentTechnical University of Munich

Department of Informatics
Informatics 9
Boltzmannstrasse 3
85748 Garching
Germany

Tel: +49-89-289-17777
Fax: +49-89-289-17757
Office: 02.09.061
Mail: vladimir.golkov@tum.de

Students who did projects under my supervision went on to become PhD students of Prof. Cremers, Prof. Navab, Prof. Rost, Prof. Nießner, Prof. Rückert, Prof. Haddadin, Prof. Precup, Prof. Razansky, Prof. Ntziachristos (with Prof. van der Smagt), Prof. Griffin & Prof. Kleinberg, Prof. Van Gool, Prof. Schindler, Prof. Liò, Prof. Theis, Prof. Runkler, Prof. Schulz, and others.

Quick links: C++, Matlab (without password), Python, NumPy, best coding practices, apprenticeship patterns / software craftsmanship (table of contents can be expanded and contains links to the entire book), student projects, mathematical image processing (free access through TUM), proximal algorithms, biology 1 2, literature network 1 2, research and scientific writing 1 2 3, thesis guide, soft skills manual for students, TUM Career Guide for International Students, TUM Career Manual, PhD scholarships 1 2 3 4 etc., conferences, Ten Simple Rules series

Grant support: Deutsche Telekom Foundation

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2020
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Journal Articles
[]		Accelerating in vivo fast spin echo high angular resolution diffusion imaging with an isotropic resolution in mice through compressed sensing (M. Naeyaert, J. Aelterman, J. Van Audekerke, V. Golkov, D. Cremers, A. Pižurica, J. Sijbers and M. Verhoye), In Magnetic Resonance in Medicine, volume Early view, 2020. [bibtex] [pdf] [doi]
Preprints
[]		Speech Synthesis and Control Using Differentiable DSP (G Fabbro, V Golkov, T Kemp and D Cremers), In arXiv preprint arXiv:2010.15084, 2020. ([listen to audio results]) [bibtex] [arXiv:2010.15084] [pdf]
[]		Deep Learning for Virtual Screening: Five Reasons to Use ROC Cost Functions (V. Golkov, A. Becker, D. T. Plop, D. Čuturilo, N. Davoudi, J. Mendenhall, R. Moretti, J. Meiler and D. Cremers), In arXiv preprint arXiv:2007.07029, 2020. [bibtex] [arXiv:2007.07029] [pdf]
Conference and Workshop Papers
[]		3D Deep Learning for Biological Function Prediction from Physical Fields (V. Golkov, M. J. Skwark, A. Mirchev, G. Dikov, A. R. Geanes, J. Mendenhall, J. Meiler and D. Cremers), In International Conference on 3D Vision (3DV), 2020. [bibtex] [arXiv:1704.04039] [pdf]
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2019
Journal Articles
[]		Efficient Deep Network Architectures for Fast Chest X-Ray Tuberculosis Screening and Visualization (F. Pasa, V. Golkov, F. Pfeiffer, D. Cremers and D. Pfeiffer), In Scientific Reports, volume 9, 2019. [bibtex] [pdf] [doi]
Preprints
[]		Deep Learning for 2D and 3D Rotatable Data: An Overview of Methods (L. Della Libera, V. Golkov, Y. Zhu, A. Mielke and D. Cremers), In arXiv preprint arXiv:1910.14594, 2019. [bibtex] [arXiv:1910.14594] [pdf]
[]		Learning to Evolve (J. Schuchardt, V. Golkov and D. Cremers), In arXiv preprint arXiv:1905.03389, 2019. [bibtex] [arXiv:1905.03389] [pdf]
Conference and Workshop Papers
[]		Negative-Unlabeled Learning for Diffusion MRI (P. Swazinna, V. Golkov, I. Lipp, E. Sgarlata, V. Tomassini, D. K. Jones and D. Cremers), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2019. [bibtex] [pdf]
[]		q-Space Novelty Detection with Variational Autoencoders (A. Vasilev, V. Golkov, M. Meissner, I. Lipp, E. Sgarlata, V. Tomassini, D. K. Jones and D. Cremers), In MICCAI 2019 International Workshop on Computational Diffusion MRI, 2019. [bibtex] [arXiv:1806.02997] [pdf]Oral Presentation
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2018
Preprints
[]		Clustering with Deep Learning: Taxonomy and New Methods (E. Aljalbout, V. Golkov, Y. Siddiqui, M. Strobel and D. Cremers), In arXiv preprint arXiv:1801.07648, 2018. [bibtex] [arXiv:1801.07648]
Conference and Workshop Papers
[]		Associative Deep Clustering - Training a Classification Network with no Labels (P. Haeusser, J. Plapp, V. Golkov, E. Aljalbout and D. Cremers), In Proc. of the German Conference on Pattern Recognition (GCPR), 2018. [bibtex] [pdf]
[]		Precursor microRNA Identification Using Deep Convolutional Neural Networks (B. T. Do, V. Golkov, G. E. Gürel and D. Cremers), In bioRxiv preprint, 2018. (bioRxiv:414656) [bibtex] [pdf]
[]		q-Space Deep Learning for Alzheimer's Disease Diagnosis: Global Prediction and Weakly-Supervised Localization (V. Golkov, P. Swazinna, M. M. Schmitt, Q. A. Khan, C. M. W. Tax, M. Serahlazau, F. Pasa, F. Pfeiffer, G. J. Biessels, A. Leemans and D. Cremers), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2018. [bibtex] [pdf]
[]		q-Space Novelty Detection in Short Diffusion MRI Scans of Multiple Sclerosis (V. Golkov, A. Vasilev, F. Pasa, I. Lipp, W. Boubaker, E. Sgarlata, F. Pfeiffer, V. Tomassini, D. K. Jones and D. Cremers), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2018. [bibtex] [pdf]
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2017
Preprints
[]		Regularization for Deep Learning: A Taxonomy (J. Kukačka, V. Golkov and D. Cremers), In arXiv preprint arXiv:1710.10686, 2017. [bibtex] [arXiv:1710.10686] [pdf]
Conference and Workshop Papers
[]		Establishment of an interdisciplinary workflow of machine learning-based Radiomics in sarcoma patients (J.C. Peeken, C. Knie, V. Golkov, K. Kessel, F. Pasa, Q. Khan, M. Seroglazov, J. Kukačka, T. Goldberg, L. Richter, J. Reeb, B. Rost, F. Pfeiffer, D. Cremers, F. Nüsslin and S.E. Combs), In 23. Jahrestagung der Deutschen Gesellschaft für Radioonkologie (DEGRO), 2017. [bibtex]
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2016
Journal Articles
[]		q-Space Deep Learning: Twelve-Fold Shorter and Model-Free Diffusion MRI Scans (V. Golkov, A. Dosovitskiy, J. I. Sperl, M. I. Menzel, M. Czisch, P. Sämann, T. Brox and D. Cremers), In IEEE Transactions on Medical Imaging, volume 35, 2016. Special Issue on Deep Learning [bibtex] [pdf]Special Issue on Deep Learning
[]		Bias and Precision Analysis of Diffusional Kurtosis Imaging for Different Acquisition Schemes (T. Sprenger, J. I. Sperl, B. Fernandez, V. Golkov, I. Eidner, P. G. Sämann, M. Czisch, E. T. Tan, C. J. Hardy, L. Marinelli, A. Haase and M. I. Menzel), In Magnetic Resonance in Medicine, 2016. (early view) [bibtex]
Conference and Workshop Papers
[]		Protein Contact Prediction from Amino Acid Co-Evolution Using Convolutional Networks for Graph-Valued Images (V. Golkov, M. J. Skwark, A. Golkov, A. Dosovitskiy, T. Brox, J. Meiler and D. Cremers), In Annual Conference on Neural Information Processing Systems (NIPS), 2016. ([video]) [bibtex] [pdf]Oral Presentation (acceptance rate: under 2%)
[]		Model-Free Novelty-Based Diffusion MRI (V. Golkov, T. Sprenger, J. I. Sperl, M. I. Menzel, M. Czisch, P. Sämann and D. Cremers), In IEEE International Symposium on Biomedical Imaging (ISBI), 2016. [bibtex] [pdf]
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2015
Book Chapters
[]		Holistic Image Reconstruction for Diffusion MRI (V. Golkov, J. M. Portegies, A. Golkov, R. Duits and D. Cremers), Chapter in Computational Diffusion MRI, Springer, 2015. [bibtex] [pdf]Book Chapter, and Oral Presentation at MICCAI 2015 Workshop on Computational Diffusion MRI
Conference and Workshop Papers
[]		FlowNet: Learning Optical Flow with Convolutional Networks (A. Dosovitskiy, P. Fischer, E. Ilg, P. Haeusser, C. Hazirbas, V. Golkov, P. van der Smagt, D. Cremers and T. Brox), In IEEE International Conference on Computer Vision (ICCV), 2015. ([video],[code]) [bibtex] [doi] [pdf]
[]		q-Space Deep Learning for Twelve-Fold Shorter and Model-Free Diffusion MRI Scans (V. Golkov, A. Dosovitskiy, P. Sämann, J. I. Sperl, T. Sprenger, M. Czisch, M. I. Menzel, P. A. Gómez, A. Haase, T. Brox and D. Cremers), In Medical Image Computing and Computer Assisted Intervention (MICCAI), 2015. [bibtex] [pdf]
[]		Free-Breathing, Self-Navigated RUFIS Lung Imaging with Motion Compensated Image Reconstruction (A. Menini, V. Golkov and F. Wiesinger), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2015. [bibtex]
[]		Robustness of Phase Sensitive Reconstruction in Diffusion Spectrum Imaging (M.I. Menzel, T. Sprenger, E.T. Tan, V. Golkov, C.J. Hardy, L. Marinelli and J.I. Sperl), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2015. [bibtex]
[]		Using Diffusion and Structural MRI for the Automated Segmentation of Multiple Sclerosis Lesions (P.A. Gómez, T. Sprenger, A.A. López, J.I. Sperl, B. Fernandez, M. Molina-Romero, X. Liu, V. Golkov, M. Czisch, P. Saemann, M.I. Menzel and B.H. Menze), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2015. [bibtex]
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2014
Book Chapters
[]		Joint Super-Resolution Using Only One Anisotropic Low-Resolution Image per q-Space Coordinate (V. Golkov, J.I. Sperl, M.I. Menzel, T. Sprenger, E.T. Tan, L. Marinelli, C.J. Hardy, A. Haase and D. Cremers), Chapter in Computational Diffusion MRI, Springer, 2014. [bibtex] [pdf]Book Chapter, and Oral Presentation at MICCAI 2014 Workshop on Computational Diffusion MRI
Conference and Workshop Papers
[]		Improved Diffusion Kurtosis Imaging and Direct Propagator Estimation Using 6-D Compressed Sensing (V. Golkov, M.I. Menzel, T. Sprenger, M. Souiai, A. Haase, D. Cremers and J.I. Sperl), In Organization for Human Brain Mapping (OHBM) Annual Meeting, 2014. [bibtex]
[]		Semi-Joint Reconstruction for Diffusion MRI Denoising Imposing Similarity of Edges in Similar Diffusion-Weighted Images (V. Golkov, M.I. Menzel, T. Sprenger, A. Haase, D. Cremers and J.I. Sperl), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. [bibtex]
[]		Direct Reconstruction of the Average Diffusion Propagator with Simultaneous Compressed-Sensing-Accelerated Diffusion Spectrum Imaging and Image Denoising by Means of Total Generalized Variation Regularization (V. Golkov, M.I. Menzel, T. Sprenger, M. Souiai, A. Haase, D. Cremers and J.I. Sperl), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. [bibtex]
[]		Total Variation-Regularized Compressed Sensing Reconstruction for Multi-Shell Diffusion Kurtosis Imaging (J.I. Sperl, T. Sprenger, E.T. Tan, V. Golkov, M.I. Menzel, C.J. Hardy and L. Marinelli), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. [bibtex]
[]		Novel Acquisition Scheme for Diffusion Kurtosis Imaging Based on Compressed-Sensing Accelerated DSI Yielding Superior Image Quality (T. Sprenger, J.I. Sperl, B. Fernandez, V. Golkov, E.T. Tan, C.J. Hardy, L. Marinelli, M. Czisch, P. Sämann, A. Haase and M.I. Menzel), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. [bibtex]
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2013
Conference and Workshop Papers
[]		Noise Reduction in Accelerated Diffusion Spectrum Imaging through Integration of SENSE Reconstruction into Joint Reconstruction in Combination with q-Space Compressed Sensing (V. Golkov, T. Sprenger, M.I. Menzel, E.T. Tan, K.F. King, C.J. Hardy, L. Marinelli, D. Cremers and J.I. Sperl), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2013. [bibtex]
[]		Phase Sensitive Reconstruction in Diffusion Spectrum Imaging Enabling Velocity Encoding and Unbiased Noise Distribution (J.I. Sperl, E.T. Tan, T. Sprenger, V. Golkov, K.F. King, C.J. Hardy, L. Marinelli and M.I. Menzel), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2013. [bibtex]
[]		SNR-dependent Quality Assessment of Compressed-Sensing-Accelerated Diffusion Spectrum Imaging Using a Fiber Crossing Phantom (T. Sprenger, B. Fernandez, J.I. Sperl, V. Golkov, M. Bach, E.T. Tan, K.F. King, C.J. Hardy, L. Marinelli, M. Czisch, P. Sämann, A. Haase and M.I. Menzel), In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2013. [bibtex]
[]		Corrected Joint SENSE Reconstruction, Low-Rank Constraints, and Compressed-Sensing-Accelerated Diffusion Spectrum Imaging in Denoising and Kurtosis Tensor Estimation (V. Golkov, M.I. Menzel, T. Sprenger, A. Menini, D. Cremers and J.I. Sperl), In ISMRM Workshop on Diffusion as a Probe of Neural Tissue Microstructure, 2013. [bibtex]
[]		Reconstruction, Regularization, and Quality in Diffusion MRI Using the Example of Accelerated Diffusion Spectrum Imaging (V. Golkov, M.I. Menzel, T. Sprenger, A. Menini, D. Cremers and J.I. Sperl), In 16th Annual Meeting of the German Chapter of the ISMRM, 2013. [bibtex]Oral Presentation
[]		Line-Process-Based Joint SENSE Reconstruction of Diffusion Images with Intensity Inhomogeneity Correction and Noise Non-Stationarity Correction (V. Golkov, T. Sprenger, M.I. Menzel, D. Cremers and J.I. Sperl), In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2013. [bibtex]Certificate of Merit Award
[]		Effects of Low-Rank Constraints, Line-Process Denoising, and q-Space Compressed Sensing on Diffusion MR Image Reconstruction and Kurtosis Tensor Estimation (V. Golkov, T. Sprenger, A. Menini, M.I. Menzel, D. Cremers and J.I. Sperl), In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2013. [bibtex]Oral Presentation
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2012
Conference and Workshop Papers
[]		Comparison of Diffusion Kurtosis Tensor Estimation Methods in an Advanced Quality Assessment Framework (V. Golkov, J.I. Sperl, T. Sprenger, H.-J. Bungartz, M. Sedlacek, E.T. Tan, L. Marinelli, C.J. Hardy, K.F. King and M.I. Menzel), In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2012. [bibtex]
[]		Evaluation of DSI Imaging with Compressed Sensing under the Presence of Different Noise Levels on a Diffusion Phantom (T. Sprenger, B. Fernandez, M. Bach, J.I. Sperl, V. Golkov, E.T. Tan, L. Marinelli, K.F. King, C.J. Hardy, Q. Zhu, M. Czisch, P. Sämann, A. Haase and M.I. Menzel), In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2012. [bibtex]