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Dr. Vladimir Golkov
Postdoctoral ResearcherTechnical University of MunichDepartment of Informatics
Informatics 9
Boltzmannstrasse 3
85748 Garching
Germany
Tel: +49-89-289-17777
Fax: +49-89-289-17757
Office: 02.09.061
Mail: vladimir.golkov@tum.de
My work focuses on deep learning since 2014. My research interests include:
- data structures such as high-dimensional and geometric data,
- data-processing goals beyond supervised learning, for example clustering or anomaly detection,
- areas of application such as biomedicine and physics.
Students who did projects under my supervision went on to become PhD students at TUM, Mila, ETHZ, Cambridge, and more.
Grant support: Deutsche Telekom Foundation
Publications:
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| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2021 | ||
|---|---|---|
| Preprints | ||
| [] |  | Scene Graph Generation for Better Image Captioning? , In arXiv preprint, 2021. |
| [] |  | Rotation-Equivariant Deep Learning for Diffusion MRI , In arXiv preprint, 2021. |
| Conference and Workshop Papers | ||
| [] |  | Rotation-Equivariant Deep Learning for Diffusion MRI (short version) , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2021. |
| [] |  | Faster and better HARDI using FSE and holistic reconstruction , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2021. |
| PhD Thesis | ||
| [] |  | Deep learning and variational analysis for high-dimensional and geometric biomedical data , PhD thesis, Department of Informatics, Technical University of Munich, Germany, 2021. |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2020 | ||
| Journal Articles | ||
| [] |  | Accelerating in vivo fast spin echo high angular resolution diffusion imaging with an isotropic resolution in mice through compressed sensing , In Magnetic Resonance in Medicine, volume 85, 2020. |
| Preprints | ||
| [] |  | Speech Synthesis and Control Using Differentiable DSP , In arXiv preprint arXiv:2010.15084, 2020. ([listen to audio results]) |
| [] |  | Deep Learning for Virtual Screening: Five Reasons to Use ROC Cost Functions , In arXiv preprint arXiv:2007.07029, 2020. |
| Conference and Workshop Papers | ||
| [] |  | 3D Deep Learning for Biological Function Prediction from Physical Fields , In International Conference on 3D Vision (3DV), 2020. |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2019 | ||
| Journal Articles | ||
| [] |  | Efficient Deep Network Architectures for Fast Chest X-Ray Tuberculosis Screening and Visualization , In Scientific Reports, volume 9, 2019. |
| Preprints | ||
| [] |  | Deep Learning for 2D and 3D Rotatable Data: An Overview of Methods , In arXiv preprint arXiv:1910.14594, 2019. |
| [] |  | Learning to Evolve , In arXiv preprint arXiv:1905.03389, 2019. |
| Conference and Workshop Papers | ||
| [] |  | Negative-Unlabeled Learning for Diffusion MRI , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2019. |
| [] |  | q-Space Novelty Detection with Variational Autoencoders , In MICCAI 2019 International Workshop on Computational Diffusion MRI, 2019. Oral Presentation |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2018 | ||
| Preprints | ||
| [] |  | Clustering with Deep Learning: Taxonomy and New Methods , In arXiv preprint arXiv:1801.07648, 2018. |
| Conference and Workshop Papers | ||
| [] |  | Associative Deep Clustering - Training a Classification Network with no Labels , In Proc. of the German Conference on Pattern Recognition (GCPR), 2018. |
| [] |  | Precursor microRNA Identification Using Deep Convolutional Neural Networks , In bioRxiv preprint, 2018. (bioRxiv:414656) |
| [] |  | q-Space Deep Learning for Alzheimer's Disease Diagnosis: Global Prediction and Weakly-Supervised Localization , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2018. |
| [] |  | q-Space Novelty Detection in Short Diffusion MRI Scans of Multiple Sclerosis , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2018. |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2017 | ||
| Preprints | ||
| [] |  | Regularization for Deep Learning: A Taxonomy , In arXiv preprint arXiv:1710.10686, 2017. |
| Conference and Workshop Papers | ||
| [] | Establishment of an interdisciplinary workflow of machine learning-based Radiomics in sarcoma patients , In 23. Jahrestagung der Deutschen Gesellschaft für Radioonkologie (DEGRO), 2017. | |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2016 | ||
| Journal Articles | ||
| [] |  | q-Space Deep Learning: Twelve-Fold Shorter and Model-Free Diffusion MRI Scans , In IEEE Transactions on Medical Imaging, volume 35, 2016. Special Issue on Deep Learning Special Issue on Deep Learning |
| [] | Bias and Precision Analysis of Diffusional Kurtosis Imaging for Different Acquisition Schemes , In Magnetic Resonance in Medicine, 2016. (early view) | |
| Conference and Workshop Papers | ||
| [] |  | Protein Contact Prediction from Amino Acid Co-Evolution Using Convolutional Networks for Graph-Valued Images , In Annual Conference on Neural Information Processing Systems (NIPS), 2016. ([video]) Oral Presentation (acceptance rate: under 2%) |
| [] |  | Model-Free Novelty-Based Diffusion MRI , In IEEE International Symposium on Biomedical Imaging (ISBI), 2016. |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2015 | ||
| Book Chapters | ||
| [] |  | Holistic Image Reconstruction for Diffusion MRI , Chapter in Computational Diffusion MRI, Springer, 2015. Book Chapter, and Oral Presentation at MICCAI 2015 Workshop on Computational Diffusion MRI |
| Conference and Workshop Papers | ||
| [] |  | FlowNet: Learning Optical Flow with Convolutional Networks , In IEEE International Conference on Computer Vision (ICCV), 2015. ([video],[code]) |
| [] |  | q-Space Deep Learning for Twelve-Fold Shorter and Model-Free Diffusion MRI Scans , In Medical Image Computing and Computer Assisted Intervention (MICCAI), 2015. |
| [] | Free-Breathing, Self-Navigated RUFIS Lung Imaging with Motion Compensated Image Reconstruction , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2015. | |
| [] | Robustness of Phase Sensitive Reconstruction in Diffusion Spectrum Imaging , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2015. | |
| [] | Using Diffusion and Structural MRI for the Automated Segmentation of Multiple Sclerosis Lesions , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2015. | |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2014 | ||
| Book Chapters | ||
| [] |  | Joint Super-Resolution Using Only One Anisotropic Low-Resolution Image per q-Space Coordinate , Chapter in Computational Diffusion MRI, Springer, 2014. Book Chapter, and Oral Presentation at MICCAI 2014 Workshop on Computational Diffusion MRI |
| Conference and Workshop Papers | ||
| [] | Improved Diffusion Kurtosis Imaging and Direct Propagator Estimation Using 6-D Compressed Sensing , In Organization for Human Brain Mapping (OHBM) Annual Meeting, 2014. | |
| [] | Semi-Joint Reconstruction for Diffusion MRI Denoising Imposing Similarity of Edges in Similar Diffusion-Weighted Images , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. | |
| [] | Direct Reconstruction of the Average Diffusion Propagator with Simultaneous Compressed-Sensing-Accelerated Diffusion Spectrum Imaging and Image Denoising by Means of Total Generalized Variation Regularization , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. | |
| [] | Total Variation-Regularized Compressed Sensing Reconstruction for Multi-Shell Diffusion Kurtosis Imaging , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. | |
| [] | Novel Acquisition Scheme for Diffusion Kurtosis Imaging Based on Compressed-Sensing Accelerated DSI Yielding Superior Image Quality , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2014. | |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2013 | ||
| Conference and Workshop Papers | ||
| [] | Noise Reduction in Accelerated Diffusion Spectrum Imaging through Integration of SENSE Reconstruction into Joint Reconstruction in Combination with q-Space Compressed Sensing , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2013. | |
| [] | Phase Sensitive Reconstruction in Diffusion Spectrum Imaging Enabling Velocity Encoding and Unbiased Noise Distribution , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2013. | |
| [] | SNR-dependent Quality Assessment of Compressed-Sensing-Accelerated Diffusion Spectrum Imaging Using a Fiber Crossing Phantom , In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2013. | |
| [] | Corrected Joint SENSE Reconstruction, Low-Rank Constraints, and Compressed-Sensing-Accelerated Diffusion Spectrum Imaging in Denoising and Kurtosis Tensor Estimation , In ISMRM Workshop on Diffusion as a Probe of Neural Tissue Microstructure, 2013. | |
| [] | Reconstruction, Regularization, and Quality in Diffusion MRI Using the Example of Accelerated Diffusion Spectrum Imaging , In 16th Annual Meeting of the German Chapter of the ISMRM, 2013. Oral Presentation | |
| [] | Line-Process-Based Joint SENSE Reconstruction of Diffusion Images with Intensity Inhomogeneity Correction and Noise Non-Stationarity Correction , In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2013. Certificate of Merit Award | |
| [] | Effects of Low-Rank Constraints, Line-Process Denoising, and q-Space Compressed Sensing on Diffusion MR Image Reconstruction and Kurtosis Tensor Estimation , In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2013. Oral Presentation | |
| 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | ||
| 2012 | ||
| Conference and Workshop Papers | ||
| [] | Comparison of Diffusion Kurtosis Tensor Estimation Methods in an Advanced Quality Assessment Framework , In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2012. | |
| [] | Evaluation of DSI Imaging with Compressed Sensing under the Presence of Different Noise Levels on a Diffusion Phantom , In European Society for Magnetic Resonance in Medicine and Biology (ESMRMB) Annual Meeting, 2012. | |
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